Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB84456.1Manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family. (164 aa)    
Predicted Functional Partners:
AEB84457.1
PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein.
 
 
 0.989
AEB86791.1
Universal protein YeaZ; KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.
  
 
 0.495
AEB84455.1
KEGG: sde:Sde_2785 hypothetical protein.
       0.490
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.486
AEB84458.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter.
     
 0.445
AEB83225.1
KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
     
 0.408
AEB84199.1
KEGG: mpt:Mpe_A2403 hypothetical protein.
  
     0.404
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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