Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB84463.1PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566. (197 aa)    
Predicted Functional Partners:
AEB83036.1
PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein.
 
     0.674
AEB83034.1
KEGG: vei:Veis_0683 general secretion pathway protein J.
  
   
 0.602
AEB85531.1
KEGG: app:CAP2UW1_0424 hypothetical protein.
  
     0.440
AEB82646.1
Peptidase C1A papain; KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal.
  
   
 0.414
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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