Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84529.1Integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: bpt:Bpet1498 putative integrase/recombinase; Belongs to the 'phage' integrase family. (419 aa)    
Predicted Functional Partners:
AEB84528.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase.
 
     0.935
AEB86654.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: tmz:Tmz1t_0371 integrase family protein.
 
     0.779
AEB85784.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: glo:Glov_1428 integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.734
AEB86020.1
KEGG: dia:Dtpsy_2714 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
  
     0.571
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.508
AEB86035.1
KEGG: ajs:Ajs_3382 DNA translocase FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma.
 
   
 0.506
AEB85015.1
KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 
 0.472
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.441
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.436
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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