Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB84551.1PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase. (195 aa)    
Predicted Functional Partners:
AEB84550.1
KEGG: rme:Rmet_1257 hypothetical protein.
 
     0.948
AEB84549.1
KEGG: bpt:Bpet2187 hypothetical protein.
 
     0.946
AEB84548.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase.
 
     0.881
AEB84546.1
KEGG: ajs:Ajs_2652 hypothetical protein.
 
     0.864
AEB84547.1
PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein.
 
     0.856
AEB83963.1
PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
 
   
 0.812
AEB84545.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
 
     0.807
AEB83955.1
Conjugation TrbI family protein; PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein.
 
   
 0.794
AEB83958.1
KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6.
 
   
 0.794
AEB83956.1
KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX.
 
   
 0.793
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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