STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB84552.1KEGG: pau:PA14_31070 hypothetical protein. (665 aa)    
Predicted Functional Partners:
AEB83963.1
PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC.
 
   
 0.791
AEB83966.1
TRAG family protein; PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG.
 
   
 0.789
AEB83955.1
Conjugation TrbI family protein; PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein.
 
     0.784
AEB83958.1
KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6.
 
     0.784
AEB83960.1
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ.
 
     0.784
AEB83965.1
PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein.
 
     0.784
AEB83956.1
KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX.
 
     0.783
AEB83957.1
KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF.
 
     0.782
AEB83979.1
PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase.
 
     0.782
AEB83980.1
KEGG: rme:Rmet_1257 hypothetical protein.
 
     0.782
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.