STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84607.1PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32. (457 aa)    
Predicted Functional Partners:
AEB83720.1
PFAM: Peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32.
 
 
 0.816
AEB84608.1
KEGG: dac:Daci_1894 hypothetical protein.
       0.635
AEB83533.1
TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.627
AEB83719.1
PFAM: SCP2 sterol-binding domain; KEGG: ajs:Ajs_3222 hypothetical protein.
 
  
 0.569
AEB84609.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
     
 0.564
AEB84606.1
KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2.
     
 0.539
AEB84605.1
Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104.
       0.531
AEB84604.1
PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein.
       0.529
AEB84603.1
KEGG: gox:GOX2135 hypothetical protein.
       0.513
AEB84602.1
KEGG: dia:Dtpsy_2274 hypothetical protein.
  
    0.405
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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