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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84608.1KEGG: dac:Daci_1894 hypothetical protein. (456 aa)    
Predicted Functional Partners:
AEB84609.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.689
AEB84607.1
PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32.
       0.635
AEB86715.1
KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW.
  
     0.597
AEB83697.1
Acetyltransferase; KEGG: bpt:Bpet1526 acetyltransferase.
 
  
 0.554
AEB86714.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein.
  
     0.529
AEB84605.1
Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104.
     
 0.471
AEB84604.1
PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein.
       0.456
AEB84606.1
KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2.
     
 0.449
AEB84603.1
KEGG: gox:GOX2135 hypothetical protein.
       0.424
AEB83694.1
PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein.
 
     0.405
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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