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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84610.1PFAM: Transposase, IS4-like; KEGG: pna:Pnap_4647 transposase, IS4 family protein. (451 aa)    
Predicted Functional Partners:
AEB85740.1
KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein.
 
   
 0.492
AEB83395.1
TIGRFAM: RNA methyltransferase, RsmD; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: RNA methyltransferase, RsmD.
  
    0.444
AEB87045.1
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.432
AEB82856.1
KEGG: pol:Bpro_2745 putative transposase.
 
   
 0.411
AEB83040.1
KEGG: pol:Bpro_2745 putative transposase.
 
   
 0.411
AEB85122.1
KEGG: pol:Bpro_2745 putative transposase.
 
   
 0.411
AEB85895.1
KEGG: pol:Bpro_2745 putative transposase.
 
   
 0.411
AEB86619.1
KEGG: pol:Bpro_2745 putative transposase.
 
   
 0.411
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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