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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84653.1KEGG: dia:Dtpsy_2105 hypothetical protein. (112 aa)    
Predicted Functional Partners:
AEB83399.1
PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein.
  
    0.763
AEB86145.1
PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2961 cytochrome c class I.
  
 
 0.580
AEB86629.1
KEGG: azc:AZC_0960 cytochrome c; manually curated; PFAM: Cytochrome c, class I.
  
 
 0.580
AEB83515.1
Bacterioferritin; Iron-storage protein.
   
  
 0.576
AEB84043.1
Bacterioferritin; Iron-storage protein.
   
  
 0.576
glnS
TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain.
  
    0.569
AEB82697.1
KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core.
  
  
 0.536
AEB84655.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein.
  
  
 0.534
AEB84656.1
PFAM: Peptide chain release factor class I/class II; KEGG: dia:Dtpsy_2102 class I peptide chain release factor.
       0.533
AEB85974.1
Cobaltochelatase; KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase.
  
  
 0.533
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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