STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84666.1PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1. (440 aa)    
Predicted Functional Partners:
AEB84667.1
KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.
 
    0.783
AEB84669.1
PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers.
 
     0.652
AEB84670.1
PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase.
 
    0.641
AEB85529.1
PFAM: General substrate transporter; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein.
  
     0.637
AEB84668.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase.
 
   
 0.630
AEB84671.1
KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the hyi family.
  
    0.570
AEB86049.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1.
 
  
 0.516
AEB84665.1
KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
     
 0.515
AEB85467.1
PFAM: Major facilitator superfamily MFS-1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein.
  
   
 0.510
AEB84664.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.426
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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