Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84671.1KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the hyi family. (269 aa)    
Predicted Functional Partners:
AEB84669.1
PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers.
 
  
 0.915
AEB84670.1
PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase.
 
  
 0.884
AEB84668.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase.
 
  
 0.860
AEB83754.1
TIGRFAM: Glyoxylate carboligase; KEGG: dac:Daci_2117 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Belongs to the TPP enzyme family.
 
  
 0.735
AEB84667.1
KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.732
AEB84666.1
PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1.
  
    0.570
AEB83756.1
TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.
  
 0.450
AEB83749.1
KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain.
 
  
 0.446
AEB84665.1
KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
  
    0.413
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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