STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84704.1KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; SMART: ATPase, AAA+ type, core. (501 aa)    
Predicted Functional Partners:
AEB84705.1
UPF0082 protein yeeN; TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; PFAM: Protein of unknown function DUF28.
       0.607
purD
Phosphoribosylamine/glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family.
       0.607
hemF
Coproporphyrinogen-III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
       0.595
AEB84703.1
PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein; Belongs to the GST superfamily.
       0.587
AEB83764.1
PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative.
 
     0.541
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.477
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.477
AEB83707.1
TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein.
 
    0.468
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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