Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84713.1KEGG: dia:Dtpsy_1711 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (406 aa)    
Predicted Functional Partners:
AEB84714.1
KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator.
 
  
 0.986
AEB84715.1
Hypothetical protein; KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family.
 
  
 0.985
AEB84717.1
KEGG: dia:Dtpsy_1716 hypothetical protein.
 
  
 0.980
AEB84716.1
KEGG: ajs:Ajs_1910 cytochrome d1, heme region.
 
  
 0.974
AEB84712.1
Hydroxylamine reductase; KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I.
 
  
 0.963
AEB84718.1
KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I.
 
  
 0.957
AEB83771.1
Nitrous oxide expression regulator, NosR; KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding.
 
  
 0.775
AEB84719.1
TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase.
 
  
 0.704
AEB83772.1
KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal.
  
  
 0.615
AEB84711.1
KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp.
 
  
 0.592
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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