Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84757.1UPF0313 protein ygiQ; HAMAP: Uncharacterised protein family UPF0313; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: dia:Dtpsy_1631 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (808 aa)    
Predicted Functional Partners:
AEB82697.1
KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core.
  
  
 0.944
AEB84756.1
Azurin blue-copper protein; Transfers electrons from cytochrome c551 to cytochrome oxidase.
       0.576
AEB85387.1
PFAM: Protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein.
   
    0.538
AEB85085.1
Polyphosphate kinase 2; KEGG: ajs:Ajs_2697 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related.
   
    0.515
AEB85703.1
Polyphosphate kinase 2; KEGG: ajs:Ajs_1514 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related.
   
    0.515
AEB83533.1
TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.478
AEB86294.1
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.478
AEB84881.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.431
AEB84755.1
PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein.
       0.428
AEB85974.1
Cobaltochelatase; KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase.
  
  
 0.414
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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