STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84834.1KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase. (611 aa)    
Predicted Functional Partners:
AEB83000.1
KEGG: dia:Dtpsy_0533 PGAP1 family protein.
     
 0.811
AEB85300.1
KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
 
 0.747
AEB82568.1
KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
 
 
0.690
AEB82922.1
KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
  
 
0.685
AEB86576.1
KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase.
  
  
 
0.684
AEB82579.1
KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase.
 
 
0.672
AEB82999.1
KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
 
0.630
AEB86798.1
KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
 
0.630
AEB86368.1
o-succinylbenzoate--CoA ligase; KEGG: bpt:Bpet0794 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase.
 
  
 0.580
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.532
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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