Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84839.1KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3. (478 aa)    
Predicted Functional Partners:
AEB84840.1
TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding.
     
 0.653
AEB84838.1
KEGG: axy:AXYL_01254 CoA-transferase family III family protein 9; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
  
 0.580
AEB84841.1
LAO/AO transport system ATPase; KEGG: xtr:100495832 uncharacterized protein CC_2483-like; TIGRFAM: ArgK protein; PFAM: ArgK protein.
 
     0.576
AEB85180.1
TIGRFAM: Isocitrate lyase; KEGG: dia:Dtpsy_1447 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase.
 
   
 0.542
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.538
AEB84836.1
KEGG: axy:AXYL_01256 3-hydroxy-3-methylglutaryl-CoA lyase 1; PFAM: Pyruvate carboxyltransferase.
     
 0.474
AEB83055.1
KEGG: dia:Dtpsy_0576 hypothetical protein.
  
     0.469
AEB84837.1
KEGG: axy:AXYL_01255 extra-cytoplasmic solute receptor family protein 24.
  
    0.467
AEB84842.1
Propionyl-CoA carboxylase; KEGG: ajs:Ajs_2042 carboxyl transferase; PFAM: Carboxyl transferase.
     
 0.454
AEB84835.1
KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
     
 0.450
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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