STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84864.1PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0308 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR. (253 aa)    
Predicted Functional Partners:
AEB84863.1
KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.
 
 
 0.849
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
 
 
 0.847
AEB84860.1
PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rpa:RPA2008 hypothetical protein.
 
     0.777
AEB86223.1
KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding.
  
 0.768
AEB84862.1
KEGG: bpt:Bpet3225 putative secreted protein.
       0.746
AEB84861.1
KEGG: axy:AXYL_04163 extra-cytoplasmic solute receptor family protein 99.
       0.677
AEB84859.1
KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
     
 0.599
AEB83666.1
TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase.
 
 
 0.490
AEB86588.1
PFAM: Sulfatase; KEGG: axy:AXYL_03117 arylsulfatase.
   
 
 0.478
AEB84866.1
PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11.
       0.474
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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