STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84885.1Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS. (641 aa)    
Predicted Functional Partners:
AEB86738.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.817
AEB84887.1
Gluconate 2-dehydrogenase (acceptor); KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal.
 
     0.563
AEB84886.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein.
  
  
 0.531
AEB84888.1
KEGG: azo:azo3872 hypothetical protein.
 
     0.524
AEB84889.1
PFAM: Biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase.
 
     0.479
acpS
Phosphopantetheine-protein transferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
  
    0.433
AEB84892.1
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rfr:Rfer_3966 transketolase; SMART: Transketolase-like, pyrimidine-binding domain.
     
 0.421
AEB84890.1
Dihydrolipoyllysine-residue acetyltransferase; KEGG: azo:azo3870 hypothetical protein; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain.
     
 0.413
AEB84891.1
PFAM: Biotin/lipoyl attachment; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment.
     
 0.413
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.