STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84887.1Gluconate 2-dehydrogenase (acceptor); KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal. (526 aa)    
Predicted Functional Partners:
AEB84888.1
KEGG: azo:azo3872 hypothetical protein.
 
     0.930
AEB84033.1
PFAM: Cytochrome c, class I; KEGG: net:Neut_1584 cytochrome c, class I.
 
 
 0.867
AEB84507.1
Gluconate 2-dehydrogenase (acceptor); KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: Cytochrome c, class I.
   
 
 0.841
AEB84886.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein.
     
 0.759
AEB84889.1
PFAM: Biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase.
 
     0.621
AEB83253.1
KEGG: ajs:Ajs_0769 putative transmembrane protein.
    
 0.587
AEB83359.1
PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein.
    
 0.587
AEB84885.1
Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS.
 
     0.563
AEB84892.1
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rfr:Rfer_3966 transketolase; SMART: Transketolase-like, pyrimidine-binding domain.
  
    0.554
AEB84891.1
PFAM: Biotin/lipoyl attachment; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment.
       0.552
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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