Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84916.1KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core. (306 aa)    
Predicted Functional Partners:
AEB86074.1
PFAM: Domain of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein.
  
 0.802
AEB84917.1
Protein of unknown function DUF3488; KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF3488; Transglutaminase-like; SMART: Transglutaminase-like.
 
  
 0.790
AEB85390.1
Lysine decarboxylase; KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal.
   
 
 0.716
AEB84915.1
PFAM: Histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein.
       0.631
AEB84914.1
PFAM: Crotonase, core; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase.
       0.564
AEB86075.1
KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.
 
  
 0.514
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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