STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB84917.1Protein of unknown function DUF3488; KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF3488; Transglutaminase-like; SMART: Transglutaminase-like. (685 aa)    
Predicted Functional Partners:
AEB84918.1
TIGRFAM: Lytic transglycosylase MltB; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B.
       0.842
AEB84916.1
KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core.
 
  
 0.790
AEB86911.1
KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
  
   
 0.765
AEB85535.1
PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ.
 
     0.758
AEB83212.1
TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM.
 
     0.757
AEB83214.1
KEGG: ajs:Ajs_0732 pilus assembly protein, PilO.
  
     0.751
AEB83213.1
PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
  
     0.746
AEB83215.1
PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP.
  
     0.746
AEB83809.1
KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1.
  
     0.721
AEB83603.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV.
  
     0.693
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.