Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB84946.1PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein. (191 aa)    
Predicted Functional Partners:
AEB84947.1
PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: ajs:Ajs_2842 glycosyl transferase family protein.
       0.530
AEB84948.1
TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Belongs to the precorrin methyltransferase family.
       0.530
AEB86540.1
KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Belongs to the flagella basal body rod proteins family.
   
 
 0.523
AEB82767.1
PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein.
  
  
 0.422
AEB83104.1
TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.401
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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