Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB85009.1Pirin domain protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: bpe:BP2937 hypothetical protein; Belongs to the pirin family. (294 aa)    
Predicted Functional Partners:
AEB84657.1
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B.
 
  
 0.707
AEB85010.1
Pirin domain protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: pag:PLES_41041 putative pirin protein; Belongs to the pirin family.
 
    
0.665
AEB85008.1
Uncharacterized flavoprotein, PP_4765 family; KEGG: dia:Dtpsy_1505 HI0933 family protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like.
       0.479
AEB83161.1
Luciferase family oxidoreductase, group 1; KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.
  
  
 0.419
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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