Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85012.1KEGG: ajs:Ajs_2356 exonuclease-like protein. (855 aa)    
Predicted Functional Partners:
AEB85011.1
PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_1503 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.975
AEB85036.1
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.744
AEB86708.1
PFAM: Cation/H+ exchanger; KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger.
 
     0.717
AEB84774.1
PFAM: Glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin.
 
     0.697
AEB86873.1
PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein.
 
   
 0.694
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
     0.686
AEB83169.1
KEGG: ajs:Ajs_0672 hypothetical protein.
  
     0.642
AEB85013.1
Thioredoxin; KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.
  
    0.629
AEB83262.1
KEGG: dia:Dtpsy_0741 putative transmembrane protein.
  
     0.626
AEB84523.1
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.578
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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