Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB85050.1KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory. (77 aa)    
Predicted Functional Partners:
AEB84125.1
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA.
  
     0.772
AEB82855.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.749
AEB85620.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1604 phage integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.727
AEB83486.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase; Belongs to the 'phage' integrase family.
 
  
 0.723
AEB85419.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ecp:ECP_1909 Int/Topo IB signature motif; other site.
 
  
 0.718
AEB85040.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_2526 phage integrase; Belongs to the 'phage' integrase family.
 
  
 0.714
AEB85044.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ppu:PP_2501 phage integrase, putative; Belongs to the 'phage' integrase family.
 
   
 0.670
AEB86175.1
Integrase; KEGG: pap:PSPA7_5324 integrase.
 
  
 0.661
AEB84207.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int); Belongs to the 'phage' integrase family.
 
  
 0.629
AEB84342.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.619
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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