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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85052.1KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease. (674 aa)    
Predicted Functional Partners:
AEB85051.1
PFAM: DNA helicase, UvrD/REP type; KEGG: rpf:Rpic12D_4971 DNA helicase II.
 
   
 0.954
AEB84424.1
KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
  
    0.795
AEB83948.1
Hypothetical protein; Manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein.
 
   
 0.785
AEB85053.1
PFAM: Histone-like bacterial DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein.
       0.773
AEB84425.1
KEGG: mca:MCA0277 hypothetical protein.
  
  
 0.770
AEB84191.1
KEGG: app:CAP2UW1_2946 N-6 DNA methylase.
  
  
 0.605
AEB84426.1
PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase.
  
  
 0.605
AEB85127.1
PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit.
  
  
 0.605
AEB86525.1
Glycosyl transferase family 2; KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: Glycosyl transferase, family 2; Capsule polysaccharide biosynthesis.
  
    0.583
AEB86292.1
Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: aav:Aave_3575 sporulation domain-containing protein.
  
     0.481
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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