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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85054.1PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein. (88 aa)    
Predicted Functional Partners:
AEB85055.1
PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region.
  
 0.927
AEB86137.1
PFAM: Integrase, catalytic core; KEGG: ajs:Ajs_3784 integrase catalytic subunit.
  
 0.812
AEB86027.1
PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region.
  
 0.800
AEB82841.1
PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region.
  
 0.798
AEB86177.1
Hypothetical protein; KEGG: pna:Pnap_4649 IS1477 transposase.
 
  
 0.426
AEB86290.1
Hypothetical protein; KEGG: pna:Pnap_4649 IS1477 transposase.
 
  
 0.426
AEB85051.1
PFAM: DNA helicase, UvrD/REP type; KEGG: rpf:Rpic12D_4971 DNA helicase II.
     
 0.420
AEB85052.1
KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease.
     
 0.409
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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