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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85080.1PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein. (165 aa)    
Predicted Functional Partners:
AEB85081.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein.
 
     0.947
AEB85082.1
LemA family protein; PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein.
 
     0.903
AEB82817.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein.
 
     0.778
AEB85707.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein.
 
     0.778
AEB85083.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_2695 major facilitator superfamily transporter.
       0.709
AEB82818.1
LemA family protein; PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein.
 
     0.699
AEB85075.1
KEGG: ajs:Ajs_2687 hypothetical protein.
       0.697
AEB85076.1
KEGG: ajs:Ajs_2688 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
       0.697
AEB85077.1
Ribose-phosphate pyrophosphokinase; KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
       0.697
AEB85078.1
KEGG: ajs:Ajs_2690 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal.
       0.697
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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