Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB85082.1LemA family protein; PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein. (203 aa)    
Predicted Functional Partners:
AEB85081.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein.
 
  
 0.948
AEB85080.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein.
 
     0.901
AEB85707.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein.
 
  
 0.831
AEB82817.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein.
 
  
 0.830
AEB85083.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_2695 major facilitator superfamily transporter.
     
 0.773
AEB85084.1
TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2696 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase.
       0.723
AEB82816.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein.
 
     0.674
AEB85708.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein.
 
     0.673
AEB85077.1
Ribose-phosphate pyrophosphokinase; KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
  
    0.664
AEB85076.1
KEGG: ajs:Ajs_2688 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
     
 0.655
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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