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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85142.1TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein. (635 aa)    
Predicted Functional Partners:
AEB85141.1
Relaxase; PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein.
 
   
 0.949
AEB85673.1
Relaxase; PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein.
 
   
 0.787
AEB85156.1
TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein.
 
  
 0.785
AEB85687.1
TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein.
 
  
 0.785
AEB85143.1
KEGG: ajs:Ajs_1548 hypothetical protein.
       0.781
AEB85153.1
KEGG: ajs:Ajs_1538 TraB pilus assembly family protein.
 
     0.769
AEB85684.1
KEGG: ajs:Ajs_1538 TraB pilus assembly family protein.
 
     0.768
AEB85166.1
TraH family protein; PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein.
 
   
 0.762
AEB85697.1
TraH family protein; PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein.
 
   
 0.761
AEB85165.1
TraF-like protein; TIGRFAM: Type IV conjugative transfer system protein TraF; KEGG: ajs:Ajs_1526 hypothetical protein.
 
     0.758
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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