Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85190.1Regulatory protein MarR; KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR. (167 aa)    
Predicted Functional Partners:
AEB85191.1
PFAM: Major facilitator superfamily MFS-1; KEGG: reu:Reut_B5563 major facilitator transporter.
 
   
 0.848
AEB85192.1
KEGG: ajs:Ajs_2412 hypothetical protein.
       0.605
AEB85189.1
Protein of unknown function UPF0005; PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; Belongs to the BI1 family.
       0.504
AEB83225.1
KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
     
 0.405
AEB86487.1
PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein.
  
     0.404
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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