Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEB85197.1Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_1611 regulatory protein TetR. (221 aa)    
Predicted Functional Partners:
cobB-2
NAD-dependent deacetylase; KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.732
AEB85198.1
PFAM: Protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428.
       0.564
AEB85199.1
PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA.
 
     0.517
AEB85200.1
KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase.
 
    0.475
AEB83099.1
KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome.
  
     0.416
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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