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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85228.1PFAM: Protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469. (112 aa)    
Predicted Functional Partners:
trpB-2
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
    0.749
AEB83108.1
TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein.
  
     0.588
AEB82859.1
Glycosyltransferase; KEGG: dia:Dtpsy_0402 glycosyltransferase.
  
     0.565
AEB84562.1
KEGG: dia:Dtpsy_2195 hypothetical protein.
  
     0.564
AEB83495.1
KEGG: rfr:Rfer_0701 hypothetical protein.
  
     0.548
AEB82861.1
KEGG: ajs:Ajs_0412 hypothetical protein.
  
     0.530
AEB83317.1
PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel.
  
     0.474
AEB85226.1
KEGG: dia:Dtpsy_1801 hypothetical protein.
       0.473
AEB82637.1
PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911.
  
     0.471
AEB82813.1
PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911.
  
     0.471
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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