Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85267.1KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A. (323 aa)    
Predicted Functional Partners:
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.792
AEB86790.1
TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
 
  
 0.713
AEB85269.1
PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator.
       0.641
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.610
AEB83426.1
PFAM: Protein of unknown function DUF3460; KEGG: ajs:Ajs_3491 hypothetical protein.
  
     0.541
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
    
 0.539
AEB84579.1
PFAM: Protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein.
  
     0.526
AEB85016.1
KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein.
  
     0.513
AEB85270.1
PFAM: Peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32.
       0.478
AEB83823.1
PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase.
  
     0.473
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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