| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplD | Alide2_2932 | Alide2_0357 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.795 |
| def | rplI | Alide2_2932 | Alide2_1326 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.800 |
| def | rplM | Alide2_2932 | Alide2_0663 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.806 |
| def | rplT | Alide2_2932 | Alide2_2827 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.832 |
| def | rplU | Alide2_2932 | Alide2_0889 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.837 |
| def | rplV | Alide2_2932 | Alide2_0361 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.823 |
| def | rplY | Alide2_2932 | Alide2_0944 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.793 |
| def | rpsB | Alide2_2932 | Alide2_3470 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.798 |
| def | rpsT | Alide2_2932 | Alide2_3522 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.806 |
| def | tig | Alide2_2932 | Alide2_1458 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.818 |
| rplD | def | Alide2_0357 | Alide2_2932 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.795 |
| rplD | rplI | Alide2_0357 | Alide2_1326 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.990 |
| rplD | rplM | Alide2_0357 | Alide2_0663 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
| rplD | rplT | Alide2_0357 | Alide2_2827 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.987 |
| rplD | rplU | Alide2_0357 | Alide2_0889 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.986 |
| rplD | rplV | Alide2_0357 | Alide2_0361 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplD | rplY | Alide2_0357 | Alide2_0944 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.975 |
| rplD | rpsB | Alide2_0357 | Alide2_3470 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.995 |
| rplD | rpsT | Alide2_0357 | Alide2_3522 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.960 |
| rplD | tig | Alide2_0357 | Alide2_1458 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.981 |
