Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB85313.1Helix-turn-helix domain protein; KEGG: dac:Daci_0461 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3. (96 aa)    
Predicted Functional Partners:
AEB86617.1
KEGG: neu:NE1310 HipA protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal.
   
 
 0.744
AEB85413.1
Helix-turn-helix domain protein; Manually curated; PFAM: Helix-turn-helix type 3; KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator; SMART: Helix-turn-helix type 3.
 
   
 0.630
AEB85314.1
KEGG: tgr:Tgr7_1875 putative lipoprotein.
 
     0.560
AEB84203.1
PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator.
  
     0.466
AEB85315.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
 
     0.457
AEB84341.1
PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family.
  
     0.424
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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