Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB85315.1PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein. (249 aa)    
Predicted Functional Partners:
AEB85316.1
KEGG: rpi:Rpic_2619 hypothetical protein.
 
     0.872
AEB85314.1
KEGG: tgr:Tgr7_1875 putative lipoprotein.
 
     0.860
AEB85319.1
KEGG: bpt:Bpet2187 hypothetical protein.
 
     0.837
AEB85320.1
KEGG: rme:Rmet_1257 hypothetical protein.
 
     0.820
AEB85321.1
PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C.
 
     0.815
AEB83981.1
KEGG: bpt:Bpet2187 hypothetical protein.
 
     0.781
AEB84549.1
KEGG: bpt:Bpet2187 hypothetical protein.
 
     0.781
AEB83986.1
Hypothetical protein; Manually curated; KEGG: rme:Rmet_1250 hypothetical protein.
 
     0.775
AEB84542.1
KEGG: rme:Rmet_1482 hypothetical protein.
 
     0.775
AEB83977.1
KEGG: pap:PSPA7_3726 hypothetical protein.
 
    0.770
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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