Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB85320.1KEGG: rme:Rmet_1257 hypothetical protein. (181 aa)    
Predicted Functional Partners:
AEB85319.1
KEGG: bpt:Bpet2187 hypothetical protein.
 
     0.948
AEB85321.1
PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C.
 
     0.948
AEB85318.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dac:Daci_2720 cobyrinic acid ac-diamide synthase.
 
     0.924
AEB85317.1
PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein.
 
     0.863
AEB85316.1
KEGG: rpi:Rpic_2619 hypothetical protein.
 
     0.856
AEB85315.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
 
     0.820
AEB83965.1
PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein.
 
     0.784
AEB83977.1
KEGG: pap:PSPA7_3726 hypothetical protein.
 
     0.782
AEB83979.1
PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase.
 
     0.782
AEB84551.1
PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase.
 
     0.782
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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