Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85329.1KEGG: lch:Lcho_3349 hypothetical protein. (135 aa)    
Predicted Functional Partners:
AEB85328.1
KEGG: lch:Lcho_3347 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC.
       0.635
AEB82892.1
KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein.
  
     0.627
AEB85330.1
KEGG: rme:Rmet_5308 hypothetical protein.
       0.600
AEB87013.1
KEGG: ajs:Ajs_4116 hypothetical protein.
  
     0.573
AEB85192.1
KEGG: ajs:Ajs_2412 hypothetical protein.
  
     0.569
AEB87014.1
SMC domain protein; PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_3475 SMC domain protein.
  
     0.502
AEB82500.1
KEGG: ajs:Ajs_0032 methyltransferase type 12.
  
     0.478
AEB83698.1
PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein.
  
     0.474
AEB82449.1
Protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153.
  
     0.420
AEB85331.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tin:Tint_2185 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.417
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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