STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85330.1KEGG: rme:Rmet_5308 hypothetical protein. (76 aa)    
Predicted Functional Partners:
AEB85329.1
KEGG: lch:Lcho_3349 hypothetical protein.
       0.600
AEB85331.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tin:Tint_2185 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.537
AEB85328.1
KEGG: lch:Lcho_3347 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC.
       0.532
AEB85332.1
KEGG: reu:Reut_A0042 glutathione peroxidase; manually curated; PFAM: Glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
     0.529
AEB86517.1
KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal.
    
   0.494
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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