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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85334.1PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1994 hypothetical protein. (232 aa)    
Predicted Functional Partners:
AEB85335.1
PFAM: Deoxyribodipyrimidine photolyase-related protein; KEGG: ctt:CtCNB1_1993 deoxyribodipyrimidine photolyase-related protein.
 
   
 0.893
AEB85333.1
PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: bav:BAV2083 hypothetical protein.
 
  
 0.784
AEB86223.1
KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding.
  
 0.768
AEB85337.1
PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase.
 
   
 0.556
AEB85336.1
beta-Ig-H3/fasciclin; KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain.
 
 
 
 0.540
AEB83666.1
TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase.
  
 
 0.490
AEB86588.1
PFAM: Sulfatase; KEGG: axy:AXYL_03117 arylsulfatase.
   
 
 0.478
AEB85243.1
PFAM: Amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase.
 
     0.468
AEB85345.1
KEGG: dia:Dtpsy_2392 putative lipoprotein.
 
   
 0.454
AEB85344.1
PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter.
 
   
 0.453
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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