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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85339.1KEGG: reu:Reut_C6238 regulatory protein, MerR; PFAM: Cobalamin (vitamin B12)-binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR. (324 aa)    
Predicted Functional Partners:
AEB85337.1
PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase.
 
  
 0.821
AEB85338.1
Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.788
AEB85341.1
PFAM: Protein of unknown function DUF1365; KEGG: bav:BAV2081 hypothetical protein.
 
   
 0.714
AEB85349.1
KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal.
 
  
 0.697
AEB85347.1
Isomerase; KEGG: bav:BAV2075 isomerase.
 
   
 0.654
AEB85343.1
KEGG: dia:Dtpsy_2394 hypothetical protein.
 
   
 0.651
AEB85344.1
PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter.
 
  
 0.641
AEB85336.1
beta-Ig-H3/fasciclin; KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain.
 
     0.638
AEB85340.1
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: bav:BAV2082 dehydrogenase.
     
 0.624
AEB83089.1
KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal.
  
 
 0.616
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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