STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85346.1PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bav:BAV2076 short-chain dehydrogenase. (260 aa)    
Predicted Functional Partners:
AEB85345.1
KEGG: dia:Dtpsy_2392 putative lipoprotein.
 
  
 0.970
AEB85347.1
Isomerase; KEGG: bav:BAV2075 isomerase.
 
  
 0.957
AEB85344.1
PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter.
 
  
 0.954
AEB85343.1
KEGG: dia:Dtpsy_2394 hypothetical protein.
 
     0.918
AEB85341.1
PFAM: Protein of unknown function DUF1365; KEGG: bav:BAV2081 hypothetical protein.
 
  
 0.916
AEB85340.1
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: bav:BAV2082 dehydrogenase.
 
   
 0.910
AEB85342.1
KEGG: dia:Dtpsy_2396 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase.
 
   
 0.812
AEB85348.1
PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein; Belongs to the GST superfamily.
       0.784
AEB85349.1
KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal.
 
    0.678
AEB85350.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dia:Dtpsy_3510 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.587
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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