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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85351.1KEGG: bvi:Bcep1808_2622 integrase catalytic subunit. (508 aa)    
Predicted Functional Partners:
AEB85352.1
KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.903
AEB82652.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB83092.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB83293.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB84258.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB84527.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB84575.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB85310.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB85859.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
AEB86628.1
KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
 0.691
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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