Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB85353.1PFAM: Protein of unknown function DUF1016; KEGG: pau:PA14_31270 hypothetical protein. (308 aa)    
Predicted Functional Partners:
AEB85354.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.882
AEB84011.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.500
AEB84545.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
  
     0.491
AEB85315.1
PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein.
  
     0.484
AEB84173.1
PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod.
 
    0.481
AEB85355.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; Belongs to the LysR transcriptional regulatory family.
       0.470
AEB84172.1
PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein.
 
     0.469
AEB83985.1
PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein.
  
     0.467
AEB84209.1
KEGG: xfa:XF2733 hypothetical protein.
 
     0.443
AEB84211.1
KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein.
  
     0.427
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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