STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85407.1TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein. (324 aa)    
Predicted Functional Partners:
AEB85408.1
Phage-type endonuclease; KEGG: har:HEAR0514 hypothetical protein; TIGRFAM: Putative phage-type endonuclease; PFAM: YqaJ viral recombinase family.
 
     0.892
AEB85409.1
KEGG: pag:PLES_23531 hypothetical protein.
 
     0.863
AEB85416.1
Transposase; KEGG: ppg:PputGB1_4754 transposase.
  
    0.670
AEB85406.1
Hypothetical protein; Manually curated; KEGG: alv:Alvin_3273 hypothetical protein.
       0.580
AEB85509.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_3340 phage integrase family protein.
 
   
 0.547
AEB85663.1
PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1562 phage transcriptional regulator, AlpA.
 
   
 0.488
AEB84769.1
PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB.
  
     0.427
AEB85897.1
KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp.
  
  
 0.419
AEB82693.1
Cupin 2 conserved barrel domain protein; KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
   
 0.416
AEB82500.1
KEGG: ajs:Ajs_0032 methyltransferase type 12.
  
     0.413
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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