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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85408.1Phage-type endonuclease; KEGG: har:HEAR0514 hypothetical protein; TIGRFAM: Putative phage-type endonuclease; PFAM: YqaJ viral recombinase family. (342 aa)    
Predicted Functional Partners:
AEB85409.1
KEGG: pag:PLES_23531 hypothetical protein.
 
     0.899
AEB85407.1
TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein.
 
     0.892
AEB85410.1
Hypothetical protein.
       0.512
AEB85897.1
KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp.
  
     0.470
AEB85416.1
Transposase; KEGG: ppg:PputGB1_4754 transposase.
  
     0.466
AEB82500.1
KEGG: ajs:Ajs_0032 methyltransferase type 12.
  
     0.461
AEB85104.1
KEGG: ajs:Ajs_1464 hypothetical protein.
  
     0.459
AEB85406.1
Hypothetical protein; Manually curated; KEGG: alv:Alvin_3273 hypothetical protein.
       0.406
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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