STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85422.1KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; PFAM: AMP-dependent synthetase/ligase. (534 aa)    
Predicted Functional Partners:
AEB85421.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.
  
 
 0.775
AEB85300.1
KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
     0.772
AEB85423.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: kko:Kkor_1470 carboxymuconolactone decarboxylase.
       0.762
AEB84319.1
KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like.
  
 
 0.758
AEB85424.1
KEGG: axy:AXYL_02565 ABC transporter family protein 37; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
       0.628
AEB85425.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: axy:AXYL_02566 ABC transporter family protein 38; SMART: ATPase, AAA+ type, core.
       0.628
AEB85426.1
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: axy:AXYL_02567 inner-membrane translocator 29; Belongs to the binding-protein-dependent transport system permease family.
       0.628
AEB85427.1
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: axy:AXYL_02568 inner-membrane translocator 30; Belongs to the binding-protein-dependent transport system permease family.
       0.628
AEB83452.1
KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding.
    
 
 0.534
AEB85431.1
KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase.
 
    
0.531
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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