STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85432.1KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator. (231 aa)    
Predicted Functional Partners:
AEB86487.1
PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein.
  
     0.633
AEB85431.1
KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase.
 
   
 0.556
AEB86486.1
PFAM: Protein of unknown function DUF1177; KEGG: axy:AXYL_04088 hypothetical protein.
  
     0.485
AEB86485.1
KEGG: aav:Aave_4364 peptidase E; PFAM: Peptidase S51; Belongs to the peptidase S51 family.
  
     0.456
AEB85428.1
PFAM: Extracellular ligand-binding receptor; KEGG: axy:AXYL_02569 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.
 
     0.437
AEB85430.1
Propanoyl-CoA C-acyltransferase; KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.420
AEB85429.1
KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
     
 0.414
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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