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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85509.1Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_3340 phage integrase family protein. (438 aa)    
Predicted Functional Partners:
AEB85407.1
TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein.
 
   
 0.547
AEB84769.1
PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB.
  
     0.530
AEB85510.1
KEGG: eba:ebA218 hypothetical protein.
       0.526
AEB86715.1
KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW.
  
     0.494
AEB82852.1
Prophage CP4-57 regulatory; KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory.
 
  
 0.452
AEB83088.1
KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator.
  
     0.444
AEB83530.1
FixH family protein; PFAM: FixH; KEGG: dia:Dtpsy_1005 hypothetical protein.
  
     0.415
AEB84011.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.414
AEB84342.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein; Belongs to the 'phage' integrase family.
  
     0.412
AEB85531.1
KEGG: app:CAP2UW1_0424 hypothetical protein.
  
     0.401
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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